BLUE STAR STING
Warp Speed Results


As anyone else, you would like to get to results quickly. Not only quickly, but you need to have an option for WARP speed so that you may analyse data, rather than spend time obtaining them. So here is the manual for SMS Warp Speed.
Also, you need to get results that should be representable, informative and their interpretation should be intuitive.
Here we show one example of the complete description for an amino acid from PDB file 1cho.pdb: His 57, belonging to the E chain. We have prepared collage of images produced by STING, Ramachandran plot, Graphical Contacts, ConSSeq and Protein Dossier. This is the most comprehensive data set that you can get in warp speed. Courtesy of STING Millennium Suite ONLY.
Enjoy the cruise!

In this example, we have first initiated STING and then asked number of question about specific amino acid: the HIS#57 in the E chain;
1) What type of internal chain contacts this residue makes? And how many? (SMS module used: Graphical Contacts)
___ See bottom left image {GC - Contacts Info Window}____
2) We asked to see in 3D constellation of residues in contact with our His 57. (SMS module used: Graphical Contacts)
___ See middle left image {STING's Graphics Window} ____
3) We were also curios to know about dihedral angles and therefore, regularity of the structure at that specific spot. (SMS module used: Ramachandran Plot)
___ See bottom middle image {Ramachandran Plot 1cho Window}___
4) We asked to see how much this spot was exposed to the evolutionary pressures and what other residues also occupy this spot. (SMS module used: ConSSeq)
___ See bottom right image {ConSSeq Applet: 1cho (Chain E) Window}___
5) Finally we asked to see all pertinent parameters that can be calculated and shown for this specific sequence and 3D spot. (SMS module used: Protein Dossier)
___See upper right image {Protein Dossier 2 Window}___

We used only a few of SMS components in this short example, however, a number of other parameters can be calculated and shown (see for additional information below!). Also, see about extensive list of Links available through SMS that can significantly enrich volume of information you are looking for about given structure.

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