Help

Help

In order to provide the appropriate INPUT files for the Java Protein Dossier mode which allows for a structural alignment of the two structures and their STING Parameters, a user needs first to obtain a TGZ file for each of the two local pdb formatted files that need to be aligned.

To do so, a user needs to go to the STING Millennium entry page where she/he will find a following table:

Public files in PDB Format [****.pdb available @PDB]	1.	Launch STING Millennium with a public PDB file

Local files [.pdb and .tgz @your_local_directory]	2.	Start STING with a local PDB file and analyze immediately a reduced parameter list calculated on line [requires 1-30s for calculation]
	3.	Start STING with a TGZ file and analyze immediately all parameters
	4.	*Generate TGZ file: submit a job to the STING_server*

By opting for a choice:

Local Files:
Generate TGZ file,

a user can obtain by e-mail a TGZ file for one and then for another structure and then enter each one of them as an input file to JPD. JPD will then call CE program for structural alignment and present STRUCTURALLY aligned STING Parameters to a user.

IMPORTANT NOTE: Any combination of TGZ and PUBLIC file will work!