Chain(s) and Parameter Area |
ROTAMER
We have used the Rotamer Library presented in Lovell et. Al. [1]. This library can be obtained at ftp://kinemage.biochem.duke.edu/pub/datasets/rotamer/rotamerDocs/Win/Complete_rotamer_lib.txt All torsion
angles are calculated according to the definition found in “A to
Z of O” (http://xray.bmc.uu.se/~alwyn/A-Z_of_O/A-Z_frameset.html).
Left mouse click:
no action A) View Table “View Table” will produce the table: In a different color is the rotamer that is near to the torsion angles of the selected amino acid. B) STING it : This option generates structural presentation with color coding of the amino acids corresponding to the "Rotamers" color coding. Amino acids are presented in CPK rendering. B1) %
B2) Rare Rotamers
[1] Lovell,S. C., Word, J. M., Richardson, J. S. and Richardson, D. C., (2000) “The Penultimate Rotamer Library”, PROTEINS: Structure, Function and Genetics, 40:389-408 |